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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7097837_7098703_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7097837 - 7098703
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATCTTT
5'SS Class:
major
3'SS Sequence:
TTTTTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
WAASPKSFTLDFGEYQESYY
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
73.4
38.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91.7
0.94
0.7
89.8
25.4
Minor 5ss
50.1
0
2.8
70.5
42
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004420
7081433 - 7182577
101145