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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7098806_7102024_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7098806 - 7102024
Intron Length:
3219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATAT
5'SS Class:
major
3'SS Sequence:
GTTTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
ATATATAGAACT
Flanking Amino Acid:
AGYIDIILKKKQSKDRFGLE
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72.8
32.3
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
84.6
0.78
0.7
77.9
36.6
Minor 5ss
45
-0.5
3
64.3
47.2
Minor BPS
48.3
-0
1.9
70.69
39.4

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004420
7081433 - 7182577
101145