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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7103957_7105760_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7103957 - 7105760
Intron Length:
1804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
TTCTGACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTGTTCTGACTT
Flanking Amino Acid:
QMHRGHMPPLTSAQQALMGT
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
63.9
35.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
81.3
0.7
0.8
77.7
35.7
Minor 5ss
29.7
-2.3
3.2
39.8
40.4
Minor BPS
56.8
0.29
1.7
75.93
41.4

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004420
7081433 - 7182577
101145