About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7105875_7106568_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7105875 - 7106568
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
CAGTCCTTCATT
Flanking Amino Acid:
DNLPPLGQDMASRVWVQNKV
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
75
0.62
1.1
77.2
36
Major PPT
77.1
0.61
0.8
74.4
36.5
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
60.7
0.42
1.8
72.56
44.8

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004420
7081433 - 7182577
101145