About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7107560_7108065_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7107560 - 7108065
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TTTTCCACAATT
Flanking Amino Acid:
LKAVQPTSGEPRQTVLTAAG
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
85.7
0.8
0.8
77.5
41
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
67.7
0.63
1.8
89.6
34.6

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004420
7081433 - 7182577
101145