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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7108165_7108929_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7108165 - 7108929
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAGG
5'SS Class:
major
3'SS Sequence:
TTTATTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
GENETDERFQDVLMSLAKAV
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.4
0.8
0.9
85.8
33.2
Minor 5ss
32.9
-1.9
2.9
40.9
44.9
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004420
7081433 - 7182577
101145