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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7109098_7110548_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7109098 - 7110548
Intron Length:
1451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAATG
Flanking Amino Acid:
STSQLVACAKVVSPTISSPV
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
76.9
33.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
73.2
0.52
0.9
66.6
34.5
Minor 5ss
30.1
-2.3
3.1
38.6
46.4
Minor BPS
67
0.4
1.4
70.32
37

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004420
7081433 - 7182577
101145