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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7119975_7121160_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7119975 - 7121160
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCTAAGGAC
5'SS Class:
weak_major
3'SS Sequence:
ATGGTGGAACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
AATGTGTGAATG
Flanking Amino Acid:
KKFIAGGFCHAKNPVLFEEN
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.18
1.3
57.4
41.6
Major BPS
54
0.1
1
59.7
32.6
Major PPT
50.1
0
1.2
40.9
46.9
Minor 5ss
15
-4
3.7
20.8
30.9
Minor BPS
42.6
-0.7
2.1
47.02
40.4

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036381
7119944 - 7182577
62634