Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7145646_7147025_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7145646 - 7147025

Intron Length:

1380

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

TTTTCTTTCTCT

Flanking Amino Acid:

KAIAVTAQEMMTKSVTNPEE

Intron Amino Acid Position:

1869

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.8

86.3

28.9

Major BPS

72.5

0.56

1.2

39.9

Major PPT

89.9

0.9

0.7

88.2

29.1

Minor 5ss

39.6

-1.2

3.2

55.5

42.8

Minor BPS

47.9

-0

3.6

87.39

38.7

Associated Gene:

Gene:

TLN2

Ensembl Gene ID:

ENSAPLG00000004060

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036381

7119944 - 7182577

62634

ENSAPLT00000004420

7081433 - 7182577

101145