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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7257744_7262478_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7257744 - 7262478
Intron Length:
4735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATGAACT
Flanking Amino Acid:
LELADKKATDAESEVASLNR
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
73.3
0.52
0.9
73
37.3
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
69.1
0.68
1.7
87.75
36.6

Associated Gene:

Gene:
TPM1
Ensembl Gene ID:
ENSAPLG00000003656
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003818
7256574 - 7274209
17636