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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7286480_7287013_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7286480 - 7287013
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGGGG
5'SS Class:
major
3'SS Sequence:
TCTTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTTGACA
Flanking Amino Acid:
RSRDLLRRIKDEAGIPGILV
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.1
47.8
42.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.2
0.79
0.9
83.2
31.9
Minor 5ss
22.2
-3.2
3.4
29.3
43.3
Minor BPS
73.1
0.72
1.1
77.15
33.9

Associated Gene:

Gene:
LACTB
Ensembl Gene ID:
ENSAPLG00000003635
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003714
7286357 - 7293767
7411