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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7297706_7298785_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7297706 - 7298785
Intron Length:
1080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTATTCATATTT
Flanking Amino Acid:
PTGGKARLTEGCSFRRKQH*
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.2
0.81
0.8
80.7
30.8
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
49.2
0.02
1.9
69
42.3

Associated Gene:

Gene:
RPS27L
Ensembl Gene ID:
ENSAPLG00000003604
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003702
7297677 - 7300741
3065