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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7298897_7300499_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7298897 - 7300499
Intron Length:
1603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGGC
5'SS Class:
major
3'SS Sequence:
TGCTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AGTTTAATAATG
Flanking Amino Acid:
NSYFMDVKCPGCYKITTVFS
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58
40.8
Major BPS
80
0.75
1
78.6
31
Major PPT
81.2
0.7
0.9
72.5
42.4
Minor 5ss
27.8
-2.5
3.7
41.2
45.5
Minor BPS
47.8
-0.3
1.9
56.57
38.7

Associated Gene:

Gene:
RPS27L
Ensembl Gene ID:
ENSAPLG00000003604
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003702
7297677 - 7300741
3065