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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7321498_7322697_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7321498 - 7322697
Intron Length:
1200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CACTGAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTGAATT
Flanking Amino Acid:
LDGKKIKLQIWDTAGQERFR
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64
0.32
1
59.4
40.4
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
64.7
0.54
1.6
83.92
36.3

Associated Gene:

Gene:
RAB8B
Ensembl Gene ID:
ENSAPLG00000003603
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003673
7306635 - 7328823
22189