About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7322759_7324079_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7322759 - 7324079
Intron Length:
1321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
ITTAYYRGAMGIMLVYDITN
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85
0.79
0.7
85.6
27.9
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
RAB8B
Ensembl Gene ID:
ENSAPLG00000003603
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003673
7306635 - 7328823
22189