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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7324158_7325219_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7324158 - 7325219
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTTCTAAAAG
Flanking Amino Acid:
IKNWIRNIEEHASSDVERMI
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.6
0.71
0.7
73.2
31.7
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
55.8
0.05
1.9
63.83
44.2

Associated Gene:

Gene:
RAB8B
Ensembl Gene ID:
ENSAPLG00000003603
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003673
7306635 - 7328823
22189