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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7325310_7326101_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7325310 - 7326101
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ACCTCTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TTCAGATTAACT
Flanking Amino Acid:
RQVSKEKGEKLAIDYGIKFL
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
74.1
0.6
1
69
38.9
Major PPT
79.1
0.65
0.8
72.2
31.8
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
55.3
0.24
2.1
77.89
44.1

Associated Gene:

Gene:
RAB8B
Ensembl Gene ID:
ENSAPLG00000003603
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003673
7306635 - 7328823
22189