About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7328299_7328730_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7328299 - 7328730
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTGAATT
Flanking Amino Acid:
DIMTKLNRKMNDNSSSGAGG
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
77.4
36.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
44.3
-0.6
2.5
58.3
40.2
Minor BPS
84.1
1.15
1.2
97.16
27.1

Associated Gene:

Gene:
RAB8B
Ensembl Gene ID:
ENSAPLG00000003603
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003673
7306635 - 7328823
22189