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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7355868_7356911_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7355868 - 7356911
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GATTCCGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GATTCCGTTACA
Flanking Amino Acid:
RHPVKISQEQLLALETAMYC
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.7
84.1
34
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73.2
0.52
1
65.1
40.9
Minor 5ss
33.5
-1.9
4
49
47.2
Minor BPS
52.1
0.06
2.3
69.26
42.4

Associated Gene:

Gene:
CA12
Ensembl Gene ID:
ENSAPLG00000003479
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022352
7355481 - 7366146
10666
ENSAPLT00000034412
7354672 - 7366146
11475
ENSAPLT00000017377
7355481 - 7363683
8203
ENSAPLT00000031712
7355481 - 7363468
7988
ENSAPLT00000003569
7353908 - 7365967
12060
ENSAPLT00000025138
7353940 - 7363818
9879
ENSAPLT00000043513
7355481 - 7366260
10780
ENSAPLT00000025066
7355481 - 7363372
7892
ENSAPLT00000043209
7354162 - 7366730
12569