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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7357070_7357514_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7357070 - 7357514
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATACAAAT
Flanking Amino Acid:
FRHFQNVKYKDQMVQVPGFN
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79
0.65
0.8
77.5
29.6
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
44.4
-0.3
2
68.8
41.3

Associated Gene:

Gene:
CA12
Ensembl Gene ID:
ENSAPLG00000003479
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017377
7355481 - 7363683
8203
ENSAPLT00000025138
7353940 - 7363818
9879
ENSAPLT00000043513
7355481 - 7366260
10780
ENSAPLT00000003569
7353908 - 7365967
12060
ENSAPLT00000025066
7355481 - 7363372
7892
ENSAPLT00000043209
7354162 - 7366730
12569
ENSAPLT00000024627
7355481 - 7365258
9778
ENSAPLT00000034412
7354672 - 7366146
11475
ENSAPLT00000022352
7355481 - 7366146
10666
ENSAPLT00000031712
7355481 - 7363468
7988