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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7360375_7362917_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7360375 - 7362917
Intron Length:
2543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
GATCTGCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGGTTTTGATCT
Flanking Amino Acid:
RFTLTNNGHSVKMYLSPTMH
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.4
0.53
1
65
41
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
50.1
0.08
1.7
68.82
42.3

Associated Gene:

Gene:
CA12
Ensembl Gene ID:
ENSAPLG00000003479
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022352
7355481 - 7366146
10666
ENSAPLT00000031712
7355481 - 7363468
7988
ENSAPLT00000043513
7355481 - 7366260
10780
ENSAPLT00000017377
7355481 - 7363683
8203
ENSAPLT00000025138
7353940 - 7363818
9879
ENSAPLT00000043209
7354162 - 7366730
12569
ENSAPLT00000003569
7353908 - 7365967
12060
ENSAPLT00000025066
7355481 - 7363372
7892
ENSAPLT00000024627
7355481 - 7365258
9778
ENSAPLT00000034412
7354672 - 7366146
11475