Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7363133_7365202_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7363133 - 7365202

Intron Length:

2070

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAT|GCACAGAAA

5'SS Class:

weak_major

3'SS Sequence:

CTAGATAGCTAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAATAAC

U12 Branch Point Sequence:

GGGATAATAACT

Flanking Amino Acid:

KSSWIPTTLSMLDKYASLLT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.5

0.2

1.4

55.7

41.3

Major BPS

70.1

0.5

70.3

31.9

Major PPT

48.8

-0

1.2

49.4

42.5

Minor 5ss

-3.2

4.1

33.5

42.5

Minor BPS

45.4

-0.2

1.9

60.56

42.2

Associated Gene:

Gene:

CA12

Ensembl Gene ID:

ENSAPLG00000003479

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024627

7355481 - 7365258

9778