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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7419198_7420768_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7419198 - 7420768
Intron Length:
1571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CATATTTTAATT
Flanking Amino Acid:
KVREHLQNLENSAFTSDRHR
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.4
0.55
0.9
70
35.3
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
64.1
0.52
1.3
72.89
38.6

Associated Gene:

Gene:
USP3
Ensembl Gene ID:
ENSAPLG00000003323
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003444
7416425 - 7433845
17421