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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7420851_7423377_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7420851 - 7423377
Intron Length:
2527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTATCTTTAACT
Flanking Amino Acid:
SMNSKLLKVNGSTTALCATG
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
78.8
0.65
0.8
69.6
35.7
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
81.9
1.08
1.1
88.57
36.5

Associated Gene:

Gene:
USP3
Ensembl Gene ID:
ENSAPLG00000003323
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003444
7416425 - 7433845
17421