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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7423461_7423918_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7423461 - 7423918
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTCT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATT
Flanking Amino Acid:
CFMNAILQSLSNIQQFCCYF
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
74.1
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
91.4
0.93
0.6
84.6
30.3
Minor 5ss
65.7
0.53
1.9
77.2
37.8
Minor BPS
65.8
0.58
2
89.07
35.8

Associated Gene:

Gene:
USP3
Ensembl Gene ID:
ENSAPLG00000003323
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003444
7416425 - 7433845
17421