About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7424777_7428656_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7424777 - 7428656
Intron Length:
3880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTTTTCACT
Flanking Amino Acid:
YVVWKIMPNFRGYQQQDAHE
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.6
93.1
14.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77
0.61
1
81.3
29.6
Minor 5ss
41.9
-0.9
2.9
57.8
46.8
Minor BPS
66.1
0.59
1.7
82.56
39.6

Associated Gene:

Gene:
USP3
Ensembl Gene ID:
ENSAPLG00000003323
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003444
7416425 - 7433845
17421