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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7428804_7430181_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7428804 - 7430181
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
CTGACTTTACCT
Flanking Amino Acid:
SSLTASSKCCINGASTVVTA
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
77.5
37.2
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
74.8
0.56
0.9
66.4
40.7
Minor 5ss
40.3
-1.1
3.4
62.1
42.3
Minor BPS
57.5
0.31
1.7
71.91
45.4

Associated Gene:

Gene:
USP3
Ensembl Gene ID:
ENSAPLG00000003323
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003444
7416425 - 7433845
17421