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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7430289_7430449_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7430289 - 7430449
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAATT
Flanking Amino Acid:
TESRKFDPFLDLSLDIPSQF
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87
0.83
0.7
81.2
36.5
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
80.4
1.03
0.9
89.47
28.1

Associated Gene:

Gene:
USP3
Ensembl Gene ID:
ENSAPLG00000003323
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003444
7416425 - 7433845
17421