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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7430531_7431543_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7430531 - 7431543
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTGAATTAGAGT
Flanking Amino Acid:
QENGPMCTLRDCLRSFTDLE
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
85.6
0.8
0.7
84.6
30.4
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
42
-0.5
2
60.01
44

Associated Gene:

Gene:
USP3
Ensembl Gene ID:
ENSAPLG00000003323
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003444
7416425 - 7433845
17421