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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7431958_7432065_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7431958 - 7432065
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATC
Flanking Amino Acid:
GLDMKCYLLEPENSGPESCL
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.5
41.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.2
0.75
0.8
78.5
33.5
Minor 5ss
38.7
-1.3
3.1
51.6
45.2
Minor BPS
74.9
0.76
1.1
77
33.7

Associated Gene:

Gene:
USP3
Ensembl Gene ID:
ENSAPLG00000003323
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003444
7416425 - 7433845
17421