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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7453576_7454470_R

Intron Information:

Intron Rank:
75
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7453576 - 7454470
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGGCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTTGGGCAATA
Flanking Amino Acid:
EYRLHEMDRQVAAVREGMSW
Intron Amino Acid Position:
4698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
64
0.32
1
58.9
41.9
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
39.7
-0.7
2.8
62.86
44.2

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959