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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7455124_7455546_R

Intron Information:

Intron Rank:
73
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7455124 - 7455546
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
AGTCTTTTGACT
Flanking Amino Acid:
ATAEVGYNRDRFLFNPSACL
Intron Amino Acid Position:
4562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
91.7
0.94
0.6
84.6
30.3
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
63.8
0.51
1.2
75.05
35.2

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959