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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7457039_7457223_R

Intron Information:

Intron Rank:
71
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7457039 - 7457223
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTC
Flanking Amino Acid:
PLITVKRISTRGRKCKPIFV
Intron Amino Acid Position:
4481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.4
0.5
1
75.7
31.8
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959