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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7457394_7457793_R

Intron Information:

Intron Rank:
70
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7457394 - 7457793
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CCTTTATTAATG
Flanking Amino Acid:
RLLNLSPNNQNSTSHYNAGT
Intron Amino Acid Position:
4425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.6
0.73
0.9
77.4
35.6
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
56.8
0.07
1.7
59.4
43.1

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959