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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7457964_7458154_R

Intron Information:

Intron Rank:
69
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7457964 - 7458154
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTACTGTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
CTTTCTTTTACT
Flanking Amino Acid:
TAPPVPPRAPGVSVPLQLGL
Intron Amino Acid Position:
4368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
68.5
0.42
1
65.8
40.8
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
73.6
0.82
1.6
87.77
37.8

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959