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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7459350_7460138_R

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7459350 - 7460138
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCAA
5'SS Class:
major
3'SS Sequence:
CTTGCAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTCTTTACAT
Flanking Amino Acid:
KDGHVYTFGQDRLIGLPEGR
Intron Amino Acid Position:
4265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
65.8
41.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.2
0.57
0.9
70.8
38.8
Minor 5ss
28.7
-2.4
3.4
37.4
47.3
Minor BPS
64.7
0.54
1.7
81.87
39.5

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959