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Intron Name: Anas_platyrhynchos_platyrhynchos_11_7460962_7461400_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7460962 - 7461400

Intron Length:

439

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCATGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTGAACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TTTCTTTGAACC

Flanking Amino Acid:

TALEGYQIGQVACGLNHTVA

Intron Amino Acid Position:

4190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

40.1

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

71.9

0.49

66.7

43.1

Minor 5ss

38.4

-1.3

4.3

63.6

48.1

Minor BPS

66.4

0.49

1.4

76.33

33.2

Associated Gene:

Gene:

HERC1

Ensembl Gene ID:

ENSAPLG00000002872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002992

7452172 - 7537130

84959