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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7463023_7463667_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7463023 - 7463667
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCACT
5'SS Class:
major
3'SS Sequence:
TCTTCTTGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTCTTCTTGACT
Flanking Amino Acid:
AAPSFSQAQQVVCGQNCTFV
Intron Amino Acid Position:
4031

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
73.3
37.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
70.8
0.47
1
66.5
39.4
Minor 5ss
36.6
-1.5
2.9
50
45.9
Minor BPS
81
1.06
1
90.56
33.4

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959