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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7465013_7465323_R

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7465013 - 7465323
Intron Length:
311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCACCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTCCCCTCACCT
Flanking Amino Acid:
MLQEQYAYEKPHVVCGDQLV
Intron Amino Acid Position:
3869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
69.8
0.44
0.8
66.3
28.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
57.3
0.31
1.9
77.75
44.4

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959