Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7465498_7467968_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7465498 - 7467968

Intron Length:

2471

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGATACTG

5'SS Class:

major

3'SS Sequence:

TGCTGTTATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

AAATTTCTAATG

Flanking Amino Acid:

GVAACSNRSKDVLVVNCTSE

Intron Amino Acid Position:

3811

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

64.4

41.5

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.6

0.55

68.6

41.3

Minor 5ss

30.2

-2.3

3.1

38.9

46.2

Minor BPS

48.7

-0.2

1.6

52.03

36.5

Associated Gene:

Gene:

HERC1

Ensembl Gene ID:

ENSAPLG00000002872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002992

7452172 - 7537130

84959