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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7468071_7468568_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7468071 - 7468568
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAC
U12 Branch Point Sequence:
TACACACTGACA
Flanking Amino Acid:
GGLMNIWSLRDGSVLQSVVI
Intron Amino Acid Position:
3777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
77.8
33.3
Major BPS
65
0.37
1
73
31.6
Major PPT
81.1
0.7
0.7
80.8
24.4
Minor 5ss
41.1
-1
3.1
48.1
47.5
Minor BPS
46.2
-0.3
2
58.51
40.4

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959