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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7469354_7469921_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7469354 - 7469921
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTATGTAAT
5'SS Class:
major
3'SS Sequence:
TGACTACCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
KGPKLQLLLATGCHNGLVCV
Intron Amino Acid Position:
3689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
79.7
35.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
71.7
0.49
0.9
67.2
39.2
Minor 5ss
44.9
-0.6
2.6
58.7
39.4
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959