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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7470122_7471007_R

Intron Information:

Intron Rank:
54
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7470122 - 7471007
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTTA
5'SS Class:
major
3'SS Sequence:
AAAAATCTAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAATTTTTAAAA
Flanking Amino Acid:
GEIVLVDAHKDMIVSMKWDP
Intron Amino Acid Position:
3623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
52.1
0.05
1
44.9
41
Minor 5ss
38.3
-1.3
3.7
54.8
49.4
Minor BPS
59.1
0.28
1.4
62.02
38

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959