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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7471139_7471999_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7471139 - 7471999
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
CCTGTTTACATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATTAAGT
Flanking Amino Acid:
IELEHCYRKDVSVTCLAWFS
Intron Amino Acid Position:
3579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
36.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
69
0.43
0.9
64.6
35.6
Minor 5ss
31.7
-2.1
3.4
39.3
41.1
Minor BPS
51.9
0.14
2.1
74.29
41.7

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959