About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7472192_7473421_R

Intron Information:

Intron Rank:
52
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7472192 - 7473421
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCTCT
5'SS Class:
weak_major
3'SS Sequence:
TTTGGGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
CAGTTCAAAAGA
Flanking Amino Acid:
EKMVNIWQVNGGKGLLDLQP
Intron Amino Acid Position:
3515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
66.8
39.3
Major BPS
75.5
0.63
1
66
40.9
Major PPT
70.3
0.46
1
61.7
44.5
Minor 5ss
59.6
0.32
2.3
71.1
41.3
Minor BPS
41.5
-0.6
2.1
48.26
42.4

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959