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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7475684_7476253_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7475684 - 7476253
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTGACATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TTTGCCATGATT
Flanking Amino Acid:
FIKLEAHQNRVMTCVWCNKK
Intron Amino Acid Position:
3430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
72.7
44.5
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
72.6
0.51
0.9
66.7
39.4
Minor 5ss
42.6
-0.8
2.9
49.5
46.5
Minor BPS
63.7
0.51
1.7
84.01
37.1

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959