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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7477958_7478688_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7477958 - 7478688
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGGC
5'SS Class:
major
3'SS Sequence:
TCATTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATT
Flanking Amino Acid:
VMRALSLLSVSGSSCSLAAG
Intron Amino Acid Position:
3199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
64.4
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
83.7
0.76
0.8
79.3
32.4
Minor 5ss
35.5
-1.6
3
44.6
43.2
Minor BPS
56.6
0.29
1.8
78.3
39.3

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959