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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7479639_7480961_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7479639 - 7480961
Intron Length:
1323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCAATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
ATTTCTCCAATT
Flanking Amino Acid:
LIGKQDSVYEEDWDMLDVDE
Intron Amino Acid Position:
3074

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
73
0.52
0.8
67
32.8
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
57.1
0.3
1.8
79.42
36.7

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959