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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7483569_7484741_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7483569 - 7484741
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
CAAATTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGATTTACCT
Flanking Amino Acid:
ATEMEEGFSESPDNMDHADN
Intron Amino Acid Position:
2851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.8
0.45
0.9
66.4
40
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
57.5
0.31
1.9
80.33
41.9

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959