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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7484974_7485136_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7484974 - 7485136
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATGATTTTATT
Flanking Amino Acid:
RQIAKAMEATGARGEADAQN
Intron Amino Acid Position:
2774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
76.8
34.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.3
0.91
0.7
88.9
27.7
Minor 5ss
45.6
-0.5
2.9
64.6
46.7
Minor BPS
48.7
-0
1.9
69.44
42.1

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959